PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.3.461.1
Common NameCHLNCDRAFT_13529
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family AP2
Protein Properties Length: 166aa    MW: 19000.2 Da    PI: 9.974
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.3.461.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.63.5e-14256151
          AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng.kr.krfslgkfgtaeeAakaaiaark 51
                 s ++GV++++ +gr++A+ +d  ++ +g  r ++++lg + t+ eAa+a+++a  
  gw1.3.461.1  2 SPFRGVTRHRLTGRYEAHFWDsSYKkGGrSRgRQIYLGGYETELEAARAYDRAVI 56
                 679******************87776667446**********99*******9975 PP

2AP252.31.4e-16103154155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++ +W+A+I  + e g +k+ +lg+++tae+Aa+a+++a  k++g
  gw1.3.461.1 103 SQYRGVTRHHQQSKWEARIGRV-E-G-NKYLYLGTYDTAEDAARAYDRACVKFRG 154
                  78****************9994.2.2.5*********************988887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.04368IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-13368IPR016177DNA-binding domain
SMARTSM003809.3E-22374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-15467IPR001471AP2/ERF domain
PfamPF008474.1E-9454IPR001471AP2/ERF domain
CDDcd000181.52E-14467No hitNo description
CDDcd000184.90E-21103164No hitNo description
PfamPF008472.3E-11103154IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-18103164IPR016177DNA-binding domain
PROSITE profilePS5103217.899104162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-20104163IPR001471AP2/ERF domain
SMARTSM003801.2E-26104166IPR001471AP2/ERF domain
PRINTSPR003671.9E-5105116IPR001471AP2/ERF domain
PRINTSPR003671.9E-5144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0009845Biological Processseed germination
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0040019Biological Processpositive regulation of embryonic development
GO:0042127Biological Processregulation of cell proliferation
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
TSPFRGVTRH RLTGRYEAHF WDSSYKKGGR SRGRQIYLGG YETELEAARA YDRAVIAHCG  60
SKAPLNFLLD DYSEDLAWIQ GRTPEEVVGI LRRGSVGFAR RASQYRGVTR HHQQSKWEAR  120
IGRVEGNKYL YLGTYDTAED AARAYDRACV KFRGSKAILN FDLSHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850705.11e-120hypothetical protein CHLNCDRAFT_13529, partial
SwissprotQ1PFE16e-62AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ389145e-61ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
SwissprotQ6PQQ35e-61AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLE1Z6801e-120E1Z680_CHLVA; Putative uncharacterized protein (Fragment)
STRINGGSMUA_Achr7P00740_0012e-61(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.13e-63AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]